NAME

ParseDb.py - Repertoire clonal assignment toolkit (Python 3)

DESCRIPTION

usage: ParseDb.py [--version] [-h] ...
Parses tab delimited database files

help:

--version
show program's version number and exit
-h, --help
show this help message and exit

subcommands:

Database operation
add
Adds field and value pairs.
delete
Deletes specific records.
drop
Deletes entire fields.
index
Adds a numeric index field.
rename
Renames fields.
select
Selects specific records.
sort
Sorts records by field values.
update
Updates field and value pairs.
merge
Merges files.
split
Splits database files by field values.

output files:

sequences
FASTA formatted sequences output from the subcommands fasta and clip.
<field>-<value>
database files partitioned by annotation <field> and <value>.
parse-<command>
output of the database modification functions where <command> is one of the subcommands add, index, drop, delete, rename, select, sort or update.

required fields:

sequence_id

AUTHOR


This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.