Ace::Graphics::Glyph::segments - The "discontinuous segments" glyph
See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.
This glyph draws a sequence feature that consists of multiple discontinuous
segments, such as the exons on a transcript or a gapped alignment. The
representation is a series of filled rectangles connected by line segments.
The features passed to it must either respond to the Bio::SequenceFeatureI-style
subSeqFeatures() method, or the AcePerl/Das-style
segments() or
merged_segments() methods.
In addition to the common options, this glyph recognizes the b<-stranded>
argument. If b<-stranded> is true and the feature is an alignment (has
the
target() method) then the glyph will draw little arrows in the
segment boxes to indicate the direction of the alignment.
Please report them.
Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel,
Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow,
Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box,
Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments,
Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,
Lincoln Stein <
[email protected]>.
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under
the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of
warranty.