NAME

AlignSets.py - Multiple aligns input sequences by group

DESCRIPTION

usage: AlignSets.py [--version] [-h] ...
Multiple aligns input sequences by group

help:

--version
show program's version number and exit
-h, --help
show this help message and exit

subcommands:

Alignment method
muscle
Align sequence sets using muscle.
offset
Align sequence sets using predefined 5' offset.
table
Create a 5' offset table by primer multiple alignment.

output files:

align-pass
multiple aligned reads.
align-fail
raw reads failing multiple alignment.
offsets-forward
5' offset table for input into offset subcommand.
offsets-reverse
3' offset table for input into offset subcommand.

output annotation fields:

None

AUTHOR


This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.