Bio::DB::GFF::Aggregator::match_gap -- GFF3 match aggregator
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Aggregator method: match_gap
Main method: match
Sub methods: match
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This aggregator is used for GFF3 style gapped alignments, in which there is a
single feature of method 'match' with a 'Gap' attribute.
The 'Gap' attribute's format consists of a series of (operartion,length) pairs
separated by space characters, for example: 'M8 D3 M6'. (see GFF reference for
complete explanation)
This module only recognizes the M and D operators, which should be sufficient
for simple nucleotide to nucleotide alignments.
None reported.
Bio::DB::GFF, Bio::DB::GFF::Aggregator
Dmitri Bichko
This library is free software; you can redistribute it and/or modify it under
the same terms as Perl itself.