Copyright [2015-2018] EMBL-European Bioinformatics Institute
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Bio::DB::HTS::Tabix::Iterator - XS module wrapping around a tabix hts_itr_t
You shouldn't be instantiating one of these manually it needs a load of
pointers. Usage would be through Bio::DB::HTS::Tabix:
use feature qw( say );
use Bio::DB::HTS::Tabix;
my $tabix = Bio::DB::HTS::Tabix->new( filename => "gerp_plus_plus_31July2014.gz" );
say $tabix->header;
my $iter = $tabix->query("1:4000005-4000009");
while ( my $n = $iter->next ) {
say $n;
}
This is returned from Bio::DB::HTS::Tabix, the only method you need to care
about is 'next'.
Don't go importing this and calling new on it if you value your sanity, it won't
work.
- "next"
- Returns a string with the line from the tabix iterator
Alex Hodgkins Rishi Nag <
[email protected]>