Bio::Factory::AnalysisI - An interface to analysis tool factory
This is an interface module - you do not instantiate it. Use
Bio::Tools::Run::AnalysisFactory module:
use Bio::Tools::Run::AnalysisFactory;
my $list = Bio::Tools::Run::AnalysisFactory->new->available_analyses;
This interface contains all public methods for showing available analyses and
for creating objects representing them.
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to the Bioperl mailing
list. Your participation is much appreciated.
[email protected] - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
[email protected]
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs
and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
Martin Senger (
[email protected])
Copyright (c) 2003, Martin Senger and EMBL-EBI. All Rights Reserved.
This module is free software; you can redistribute it and/or modify it under the
same terms as Perl itself.
This software is provided "as is" without warranty of any kind.
- •
- http://www.ebi.ac.uk/Tools/webservices/soaplab/guide
This is actually the main documentation...
If you try to call any of these methods directly on this
"Bio::Factory::AnalysisI" object you will get a
not
implemented error message. You need to call them on a
"Bio::Tools::Run::AnalysisFactory" object instead.
Usage : $factory->available_categories;
Returns : an array reference with the names of
available categories
Args : none
The analysis tools may be grouped into categories by their functional
similarity, or by the similar data types they deal with. This method shows all
available such categories.
Usage : $factory->available_analyses;
$factory->available_analyses ($category);
Returns : an array reference with the names of
all available analyses, or the analyses
available in the given '$category'
Args : none || category_name
Show available analyses. Their names usually consist of category analysis names,
separated by "::".
Usage : $factory->create_analysis ($name);
Returns : a Bio::Tools::Run::Analyis object
Args : analysis name
A real
factory method creating an analysis object. The created object
gets all access and location information from the factory object.