Bio::Roary::External::Blastp

NAME

Bio::Roary::External::Blastp - Wrapper around NCBIs blastp command

VERSION

version 3.13.0

SYNOPSIS

Wrapper around NCBIs blastp command

   use Bio::Roary::External::Blastp;
   
   my $blast_database= Bio::Roary::External::Blastp->new(
     fasta_file => 'contigs.fa',
     blast_database => 'db',
     exec       => 'blastp',
     output_file => 'results.out'
   );
   
   $blast_database->run();

METHODS

result_file

Returns the path to the results file

AUTHOR

Andrew J. Page <[email protected]>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007