Bio::Roary::External::Makeblastdb

NAME

Bio::Roary::External::Makeblastdb - Wrapper around NCBIs makeblastdb command

VERSION

version 3.13.0

SYNOPSIS

Take in a fasta file and create a temporary blast database.

   use Bio::Roary::External::Makeblastdb;
   
   my $blast_database= Bio::Roary::External::Makeblastdb->new(
     fasta_file => 'contigs.fa',
     exec       => 'makeblastdb'
   );
   
   $blast_database->run();

METHODS

output_database

Returns the path to the temporary blast database files

AUTHOR

Andrew J. Page <[email protected]>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007