NAME

CAT - tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)

SYNOPSIS

CAT (prepare | contigs | bin | bins | add_names | summarise) [-v / --version] [-h / --help]

DESCRIPTION

Run Contig Annotation Tool (CAT) or Bin Annotation Tool (BAT).

OPTIONS

Required choice:

prepare
Download database files and construct databases.
contigs
Run CAT.
bin
Run BAT on a single bin.
bins
Run BAT on a set of bins.
add_names
Add taxonomic names to CAT or BAT output files.
summarise
Summarise a named CAT or BAT classification file.

Optional arguments:

-v, --version
Print version information and exit.
-h, --help
Show this help message and exit.

AUTHOR


This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.