EDTSurf - quick and accurate construction of macromolecular surfaces
EDTSurf -i pdbname ...
EDTSurf is a open source program to construct triangulated surfaces for
macromolecules. It generates three major macromolecular surfaces: van der
Waals surface, solvent-accessible surface and molecular surface
(solvent-excluded surface). EDTsurf also identifies cavities which are inside
of macromolecules.
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-o outname
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-t 1-MC 2-VCMC
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-s 1-VWS 2-SAS 3-MS 4-SES
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-c 1-pure 2-atom 3-chain
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-p probe radius [0,2.0]
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-f scale factor (0,20.0]
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-h 1-in and out 2-out 3-in
output1: outname.ply
output2: outname.asa
output3: outname-cav.pdb