NAME

SplitSeq.py - Sorts, samples and splits FASTA/FASTQ sequence files

DESCRIPTION

usage: SplitSeq.py [--version] [-h] ...
Sorts, samples and splits FASTA/FASTQ sequence files

help:

--version
show program's version number and exit
-h, --help
show this help message and exit

subcommands:

Sequence file operation
count
Splits sequences files by number of records.
group
Splits sequences files by annotation.
sample
Randomly samples from unpaired sequences files.
samplepair
Randomly samples from paired-end sequences files.
sort
Sorts sequences files by annotation.
select
Selects sequences from sequence files by annotation.

output files:

part<part>
reads partitioned by count, where <part> is the partition number.
<field>-<value>
reads partitioned by annotation <field> and <value>.
under-<number>
reads partitioned by numeric threshold where the annotation value is strictly less than the threshold <number>.
atleast-<number>
reads partitioned by numeric threshold where the annotation value is greater than or equal to the threshold <number>.
sorted
reads sorted by annotation value.
sorted-part<part>
reads sorted by annotation value and partitioned by count, where <part> is the partition number.
sample<i>-n<count>
randomly sampled reads where <i> is a number specifying the sampling instance and <count> is the number of sampled reads.
selected
reads passing selection criteria.

output annotation fields:

None

AUTHOR


This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.