VFDB_cdhit_to_csv

NAME

VFDB_cdhit_to_csv - Parse cdhit results

SYNOPSIS

VFDB_cdhit_to_csv [-h] --cluster_file CLUSTER_FILE --infile INFILE --outfile OUTFILE

DESCRIPTION

This tool is part of the SRST2 suite. Output a comma-separated table of alleles, their inferred gene name (from annotation) and their 90% cluster from CD-HIT analysis

OPTIONS

optional arguments:

-h, --help

show this help message and exit

--cluster_file CLUSTER_FILE

cd hit output file (.clstr)

--infile INFILE

raw sequences file that was input to cdhit (fasta)

--outfile OUTFILE

output file (csv)

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.