NAME
Aevol - an in silico experimental evolution platformSYNOPSIS
aevol_misc_extract -h | --helpDESCRIPTION
Aevol is a simulation platform that allows one to let populations of digital organisms evolve in different conditions and study experimentally the mechanisms responsible for the structuration of the genome and the transcriptome.- aevol_misc_extract
- extracts the genotype and/or data about the phenotype of individuals in the provided population and write them into text files easy to parse with e.g. matlab.
OPTIONS
- -h, --help
- print help, then exit
- -V, --version
- print version number, then exit
-t
TIMESTEP
specify timestep of the individual(s) of interest
-S
SEQ_FILE
extract sequences into file SEQ_FILE
-T
TRIANGLE_FILE
extract phenotypic data into file TRIANGLE_FILE
-U
NUM_GU
only treat genetic unit #NUM_GU
default: treat all genetic units
-a
treat all the individuals
default: treat only the best
SEE ALSO
ae_misc_lineage, aevol_create, aevol_modify, aevol_propagate, aevol_run| July 2016 | aevol 5.0 |