alignment-chop-internal - Remove ancestral sequences from an alignment.
alignment-chop-internal [OPTIONS] <
alignments-file
Remove ancestral sequences from an alignment.
-
-h, --help
- produce help message
-
--align arg
- file with sequences and initial alignment
-
--alphabet arg
- set to 'Codons' to prefer codon alphabets
-
--tree arg
- file with tree that specifies leaves to keep
-
-N arg, --nleaves arg
- number of sequences to keep
BAli-Phy online help: <
http://www.bali-phy.org/docs.php>.
Please send bug reports to <
[email protected]>.
Benjamin Redelings.