art_profiler_illumina - program for generating empirical 454 read profiles
This tool is to create an illumina read quality profile from multiple fastq or
gzipped fastq files
art_profiler_illumina out_profile_name input_fastq_dir
[fastq_filename_extension (default: fq)]
- out_profile_name:
- the name of read quality profile
- input_fastq_dir:
- the directory of input fastq or zipped fastq files
- fastq_filename_extension: fastq or gzipped fastq filename
extension (default: fq)
- 1) create hiseq2k profiles from all *.fq.gz in the
directory fastq_dat_dir
- art_profiler_illumina hiseq2k fastq_dat_dir fq.gz
- 2) create miseq2500 profiles from all *.fq in the directory
fastq_dat_dir
- art_profiler_illumina miseq250 fastq_dat_dir fq
- 3) create hiseq1k profiles from all *.fq in the directory
fastq_dat_dir
- art_profiler_illumina hiseq1k fastq_dat_dir
NOTES: For paired-end fastq files, e.g., *.fq or *.fq.gz, the filenames of the
1st reads must be *_1.fq/*_1.fq.gz, or *.1.fq/*.1.fq.gz and those of the 2nd
reads must be *_2.fq./*_2.fq.gz, or *.2.fq or *.2.fq.gz
This program was written by Weichun Huang <
[email protected]>
This manpage was written by Andreas Tille for the Debian distribution and can be
used for any other usage of the program.