beads - 2D gel electrophoresis spot detection
beads [
--inverse --steps -p parameter file]...
-i INPUT
-o OUTPUT
detect and quantify spots in INPUT gel image file.
- -i
- path to the gel image input file
- -o
- path to the output file
-
-p, --param
- path to the parameter file
- --inverse
- inverse pixel intensity in the source gel image, must be
"true" or "false" ("true" by default)
- --steps
- save each image computed by beads at each step of the
process into TIFF files. This option can be used to tune parameter file.
beads produces several files format as output: xml, txt, jpg, tif and svg. To
choose the output file format, just write the corresponding extension in the
output filename OUTPUT
beads was written by Michel Zivy <
[email protected]> and Olivier
Langella <
[email protected]>.
Copyright CeCILL
The beads homepage :
http://pappso.inra.fr/bioinfo/beads/index.php