bed2bed_display

NAME

SYNOPSIS

DESCRIPTION

- version 1.5.5 where options are:

-d|--debug

Produce Debug information

-h|--help

Show this Help text

-f|--feature <ft>

Set Feature name <ft>

-o|--oformat <1|2>

Set output Format (1:BED[Def] 2:BedGraph)

--name <name>

Set name for track name field [def. name=SGA-feature]

--desc <desc>

Set track description field [def. desc="ChIP-Seq Custom data"]

--color <col>

Define the track color in comma-separated RGB values [def. 100,100,100]

--autoscale

<on|off> Data viewing paramenter: set auto-scale to UCSC data view [def=OFF]

--always0

<on|off> Data viewing paramenter: always include zero [def=OFF]

--wfunction

<func> Data viewing paramenter: windowing function [def=mean+whiskers|maximum|mean|minimum]

--smoothing

<grade> Data viewing paramenter: smoothing window [def=OFF[0], <grade>=0,2..16]

--visibility <mode>

Display mode: [def=dense|full|hide] or [def=1|2|3]

Convert BED file to BED format suitable for displaying ChIP-seq peaks. Two formats are supported: 1) BED Track with Score field; 2) BedGraph. For BED track format, only the graphical parameter 'visibility' can be set.

AUTHOR