bedops-starch - manual page for bedops-starch 2.4.41+dfsg
starch
- citation:
http://bioinformatics.oxfordjournals.org/content/28/14/1919.abstract
- https://doi.org/10.1093/bioinformatics/bts277
- binary version: 2.4.41 (typical) (creates archive version:
2.2.0) authors: Alex Reynolds and Shane Neph
USAGE: starch [
--note="foo bar..." ]
- [ --bzip2 | --gzip ] [
--omit-signature ] [ --report-progress=N ] [
--header ] [ <unique-tag> ] <bed-file>
- * BED input must be sorted lexicographically (e.g., using
BEDOPS sort-bed). * Please use '-' to indicate reading BED data from
standard input. * Output must be directed to a regular file. * The bzip2
compression type makes smaller archives, while gzip extracts
- faster.
- Process Flags
--------------------------------------------------------------------------
--note="foo bar..." Append note to output archive
metadata (optional).
-
--bzip2 | --gzip
- Specify backend compression type (optional, default is
bzip2).
- --omit-signature
- Skip generating per-chromosome data integrity signature
(optional, default is to generate signature).
-
--report-progress=N
- Report compression progress every N elements per chromosome
to standard error stream (optional)
- --header
- Support BED input with custom UCSC track, SAM or VCF
headers, or generic comments (optional).
- <unique-tag>
- Optional. Specify unique identifier for transformed
data.
- --version
- Show binary version.
- --help
- Show this usage message.
The full documentation for
bedops-starch is maintained as a Texinfo
manual. If the
info and
bedops-starch programs are properly
installed at your site, the command
- info bedops-starch
should give you access to the complete manual.