bowtie-inspect - extracts information from a bowtie index
bowtie-inspect [
options]
* <ebwt_base>
- <ebwt_base>
- ebwt filename minus trailing .1.ebwt/.2.ebwt
- By default, prints FASTA records of the indexed nucleotide
sequences to standard out. With -n, just prints names. With
-s, just prints a summary of the index parameters and sequences.
With -e, preserves colors if applicable.
- --large-index
- force inspection of the 'large' index, even if a 'small'
one is present.
-
-a/--across <int>
- Number of characters across in FASTA output (default:
60)
-
-n/--names
- Print reference sequence names only
-
-s/--summary
- Print summary incl. ref names, lengths, index
properties
-
-e/--ebwt-ref
- Reconstruct reference from ebwt (slow, preserves
colors)
-
-v/--verbose
- Verbose output (for debugging)
-
-h/--help
- print detailed description of tool and its options
- --help
- print this usage message
64-bit Built on Debian-reproducible Mon, 19 Sep 2022 02:49:13 +0000 Compiler:
gcc version 12.2.0 Options:
-O3 -Wl,--hash-style=both
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-fstack-protector-strong -Wformat
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format-security -std=
c++03
-Wl,-z,relro
-Wl,-z,now Sizeof {int, long, long long, void*,
size_t, off_t}: {4, 8, 8, 8, 8, 8}