bowtie2-inspect-l - extracts information from a bowtie2 index
bowtie2-inspect [
options]
* <bt2_base>
Bowtie 2 version 2.5.0 by Ben Langmead (
[email protected],
www.cs.jhu.edu/~langmea)
- <bt2_base>
- bt2 filename minus trailing .1.bt2l/.2.bt2l
- By default, prints FASTA records of the indexed nucleotide
sequences to standard out. With -n, just prints names. With
-s, just prints a summary of the index parameters and
sequences.
-
-a/--across <int>
- Number of characters across in FASTA output (default:
60)
-
-n/--names
- Print reference sequence names only
-
-s/--summary
- Print summary incl. ref names, lengths, index
properties
-
-o/--output
- Save output to filename (default stdout)
-
-v/--verbose
- Verbose output (for debugging)
-
-h/--help
- print this and message quit