bp_make_mrna_protein - Convert an input mRNA/cDNA sequence into protein
Convert an input mRNA/cDNA sequence into protein using
translate()
-f/--frame Specifies frame [0,1,2]
One can also specify:
-t/--terminator Stop Codon character (defaults to '*')
-u/--unknown Unknown Protein character (defaults to 'X')
-cds/--fullcds Expected Full CDS (with start and Stop codon)
-throwOnError Throw error if no Full CDS (defaults to 0)
-if/--format Input format (defaults to FASTA/Pearson)
-of/--format Output format (defaults to FASTA/Pearson)
-o/--output Output Filename (defaults to STDOUT)
-i/--input Input Filename (defaults to STDIN)
-ct/--codontable Codon table to use (defaults to '1')
See Bio::PrimarySeq for more information on codon tables and the
translate() method
Email jason-at-bioperl-dot-org