download-ncbi-data - download specific data from NCBI's FTP site
download-ncbi-data
pmc-oa|
pmc-bioc|
bioconcepts|
generif|
meshtree|
taxnames|
serials|
journals|
oa-list|
oa-book accession|
carotene
download-ncbi-data downloads the requested data to the current directory.
- pmc-oa
- Download PubMed Central open-access archives in traditional
format, unless already present.
- pmc-bioc
- Download PubMed Central open-access archives in BioConcepts
format, unless already present.
- bioconcepts
- Download mappings from chemical, disease, and gene names to
PubTatorCentral unless already present.
- generif
- Download GeneRif data, unless already present, and extract
some summaries.
- taxnames
- Download a taxonomic database and produce a table
summarizing correspondences between taxonomic IDs and scientific or common
names.
- serials
- Download a database of serials indexed by NLM and extract
some summaries.
- journals
- Download a database of journals indexed by PubMed and
extract some summaries.
- meshtree
- Download MeSH data and extract some summaries.
- oa-list
- Download a list of open access books, unless already
present, and extract a summary.
- oa-book accession
- Download the open access book with the specified accession.
First produce a list and summary as above if necessary.
- carotene
- Download and unzip sample XML for carotene.
archive-pubmed(1),
download-ncbi-software(1),
download-pmc(1),
download-pubmed(1),
download-sequence(1),
index-extras(1),
index-pubmed(1),
phrase-search(1),
nquire(1),
xtract(1).