ali2gff - Module to translate a MUMmer output files into gff formatted output.
ali2gff [-r] [-t <.|0|1|2>] [-x <name>] [-y <name>]
[-H] [-f] [-h] <MUMmer_output_file>
- -h, --help
- Show summary of options.
- -r
- Interchange the order of sequences (sequence 1 on y-axis,
sequence 2 on x-axis).
- -t <.|0|1|2>
- Put label 'frame' in gff output.
- -x <name>
- Specify the species name for species1 (default:
"Seq1").
- -y <name>
- Specify the species name for species2 (default:
"Seq2").
- -i
- Ignore full sequence identities.
- -f
- Write output to file.
blat2gff(1),
gff2aplot(1),
parseblast(1),
sim2gff(1).
ali2gff was written by Steffi Gebauer-Jung.
This manual page was written by Nelson A. de Oliveira <
[email protected]>,
for the Debian project (but may be used by others).