sim2gff - Converts SIM file into GFF formatted records
sim2gff [-frxyHh] sim_file > gff_file
This manual page documents briefly the
sim2gff command.
sim2gff is a program written in Perl that converts SIM file into GFF
formatted records (for use with gff2aplot and gff2javaplot).
- -h, --help
- Show summary of options.
- -f
- Output is written to a file named
<sim_file>.gff.
- -r
- Interchange the order of sequences (Seq1 on y-axis, Seq2 on
x-axis).
- -x <name>
- Specify the species name for species1 (default:
"Seq1").
- -y <name>
- Specify the species name for species2 (default:
"Seq2").
- -H
- Use the fasta file headers for species labels.
The following perl-like exit status are returned:
0 Error
1 Successful completion
ali2gff(1),
blat2gff(1),
gff2aplot(1),
parseblast(1).
sim2gff was written by Thomas Wiehe <
[email protected]>.
This manual page was written by Nelson A. de Oliveira <
[email protected]>,
for the Debian project (but may be used by others).