asn2xml - translate biological data from ASN.1 to XML
asn2xml [
-] [
-b F] [
-e] [
-i filename] [
-l filename] [
-o filename] [
-s]
asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1 format to an
isomorphic XML representation. It differs from
asn2asn -x in that it
converts packed sequence data back into human-readable ASCII text.
A summary of options is included below.
- -
- Print usage message
- -b F
- Input asnfile in text mode
- -e
- Input is a Seq-entry
-
-i filename
- Read ASN.1 from filename (default is stdin)
-
-l filename
- Log errors to filename (default is stderr)
-
-o filename
- Write XML to filename (default is stdout)
- -s
- Input is a Seq-submit
The National Center for Biotechnology Information.
asn2all(1),
asn2asn(1),
asn2ff(1),
asn2fsa(1),
asn2gb(1),
asndhuff(1),
gene2xml(1),
/usr/share/doc/ncbi-tools-bin/README.asn2xml,
/usr/share/doc/libncbi6/ncbixml.txt.gz