asn2gb

NAME

asn2gb - convert ASN.1 biological data to a GenBank-style flat format

SYNOPSIS

asn2gb [ -] [ -A accession] [ -F] [ -a asn-type] [ -b] [ -c] [ -d] [ -f  format] [ -g N] [ -h  N] [ -i filename] [ -j  N] [ -k N] [ -l filename] [ -m mode] [ -n  filename] [ -o filename] [ -p] [ -q filename] [ -r] [ -s  style] [ -t N] [ -u  N] [ -y N]

DESCRIPTION

asn2gb converts descriptions of biological sequences from NCBI's ASN.1 format to one of several flat-file formats, and is the successor to asn2ff(1).

OPTIONS

A summary of options is included below.

-

Print usage message

-A accession

Accession to fetch; may take the form accession,complexity,flags where complexity should normally be 0 and a flags value of -1 enables fetching of external features (as with the legacy -F option)

-F

Fetch remote annotations (equivalent to specifying -A  accession,0,-1)

-a asn-type

ASN.1 Type:

-b

Input file is binary

-c

Batch file is compressed

-d

Seq-loc minus strand

-f format

Format:

-g N

Bit flags (all default to off):

-h N

Lock/Lookup Flags (all default to off):

-i filename

Input file name (default = stdin)

-j N

Start location (default is 0, beginning of sequence)

-k N

End location (default is 0, end of sequence)

-l filename

Log file

-m mode

Mode:

-n filename

Asn2Flat Executable (default = asn2flat)

-o filename

Output file name (default = stdout)

-p

Propagate top descriptors

-q filename

Ffdiff Executable (default = /netopt/genbank/subtool/bin/ffdiff)

-r

Enable remote fetching

-s style

Style:

-t N

Batch:

-u N Custom flags (all default to off):

-y N

Feature itemID

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2xml(1), asndhuff(1), insdseqget(1), /usr/share/doc/libncbi6-dev/asn2gb.txt.gz.