gbseqget - format sequences from GenBank as an XML GBSet
gbseqget [
-] [
-d filename] [
-i filename] [
-m n/p/b] [
-n] [
-o filename] [
-v]
gbseqget retrieves biological sequence data from GenBank (according to an
input list of GI accession numbers) and prints it out as an XML GBSet
document.
A summary of options is included below.
- -
- Print usage message
-
-d filename
- Input file name for date list (desired accessions, one per
line, followed by a blank line and a list of allowed dates, also one per
line)
-
-i filename
- Input file name for GI list (default = stdin)
-
-m n/p/b
- Molecule type:
- n
- Nucleotide (default)
- p
- Protein
- b
- Both
- -n
- Return only new records (for which the given GI refers to
an old version)
-
-o filename
- Output file name for the XML GBSet (default = stdout)
- -v
- Fetch SNP Variations
The GBSet format is deprecated in favor of INSDSet, which you can produce by
running
insdseqget in place of
gbseqget.
The National Center for Biotechnology Information.
asn2gb(1),
insdseqget(1).