Section 1 of the manual describes user commands and tools, for example, file manipulation tools, shells, compilers, web browsers, file and image viewers and editors, and so on.
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- asnval
- validate ASN.1 biological sequence records
- asp-state
- XSP - Mono ASP.NET Session State Server
- asp-state4
- XSP - Mono ASP.NET Session State Server
- aspcud
- solve dependencies between packages
- aspell-import
- import old personal dictionaries into GNU Aspell
- aspell
- interactive spell checker
- aspic
- a line-art processor
- aspline
- Akima spline interpolation
- ass
- autonomous system scanner
- assa-genesis-3.5
- assa-genesis - generates skeleton files for RAD development with ASSA library
- assa-hexdump-3.5
- assa-hexdump - Dump the contents of the file in hex to standard output
- assembly-stats
- get assembly statistics from FASTA and FASTQ files
- assign_lisa
- sgbdemos - Examples of the use of The Stanford GraphBase
- assimp
- Open Asset Import Library Tool
- assword
- impass - Simple and secure password management and retrieval system
- astarithmetic
- Arithmetic - arithmetic operations on images and numbers
- astbuildprog
- BuildProgram - compile, link with Gnuastro library and its dependencies, and run a C program
- astcenc
- compress or decompress images using the ASTC format
- astconvertt
- ConvertType - convert known data types to each other
- astconvolve
- Convolve - convolve an image with a given kernel
- astcosmiccal
- CosmicCalculator - estimate cosmological values
- astcrop
- Crop - crop regions of a dataset
- astfits
- Fits - view and manipulate FITS headers
- astmatch
- Match - match catalogs by 1D or 2D positions
- astmkcatalog
- MakeCatalog - Make a catalog from labeled input images
- astmknoise
- MakeNoise - add noise to an image
- astmkprof
- MakeProfiles - make standard 2D profiles on an image
- astnoisechisel
- NoiseChisel - detect signal in a noisy image
- astquery
- query - query remote data servers and download
- astroid
- graphical threads-with-tags style, lightweight and fast, e-mail client for Notmuch
- astrometry-engine
- Identify where a list of stars is on the sky
- astscript-ds9-region
- Create an SAO DS9 region file from a table
- astscript-fits-view
- View FITS images in DS9 and tables in TOPCAT based on contents
- astscript-psf-scale-factor
- Find factor to scale PSF to a given star in an image
- astscript-psf-select-stars
- Select good stars for constructing the PSF
- astscript-psf-stamp
- Make normalized stamp of star with background objects masked
- astscript-psf-subtract
- Subtract a given PSF model from the image of star
- astscript-psf-unite
- Unite the outer and inner regions of the PSF into one
- astscript-radial-profile
- Create a radial profile of an object in an image
- astscript-sort-by-night
- Sort input FITS files by night
- astsegment
- Segment - segmentation based on signal structure
- aststatistics
- Statistics - calculate statistics of a dataset
- asttable
- Table - read and write ASCII and FITS tables
- astwarp
- Warp - warp (transform) input dataset
- astyle
- multi-language indentation and reformatting filters
- asunder
- graphical audio CD ripper and encoder
- asxxxx
- ASxxxx - Series of microprocessor cross assemblers for SDCC
- asy
- Asymptote: a script-based vector graphics language
- at
- at, batch, atq, atrm - queue, examine, or delete jobs for later execution
- at
- This manual page is part of the POSIX Programmer's Manual. The Linux implementation of this interface may differ (consult the corresponding Linux manual page for details of Linux behavior), or the interface may not be implemented on Linux
- atac
- comparative mapping between genome sequences
- ataglist
- print audio file metadata
- ataqv
- QC metrics for ATAC-seq data
- atari-convert-dir
- helper for creating Atari compatible disk images
- atari-hd-image
- tool for creating a harddisk image for use with Hatari
- atari800
- emulator of Atari 8-bit computers and the 5200 console
- atari800.curses
- atari800 - emulator of Atari 8-bit computers and the 5200 console
- atari800.sdl
- atari800 - emulator of Atari 8-bit computers and the 5200 console
- atari800.x11
- atari800 - emulator of Atari 8-bit computers and the 5200 console
- atdcat
- syntax check and transformations of ATD files
- atdgen
- ATD compiler and code generator
- atemswitch
- CLI client for the OpenSwitcher proxy HTTP api
- atest
- Decode AX.25 frames from an audio file.
- atf-check
- executes a command and analyzes its results
- atf-sh
- atf-sh [ -s
- atf-test-program
- common interface to ATF test programs
- atfsit
- A program to prepare files for version control
- atfsrepair
- repair corrupted AtFS repository, or convert old repository to new format
- atftp
- TFTP client (RFC1350)
- athena-jot
- jot - print sequential or random data
- athena
- interactive XAS data processing
- aticonfig
- parse an existing X-Server configuration file and modify it to operate with ATI products
- atig
- Another Twitter IRC Gateway
- atigetsysteminfo
- generate a system configuration report
- atiodcli
- System tray support for the ATI RADEON and FireGL control center
- atiode
- proprietary ATI RADEON and FireGL stress testing
- atktopbm
- convert Andrew Toolkit raster object to PBM
- atlc
- an Arbitrary Transmission Line Calculator
- atobm
- bitmap, bmtoa, atobm - bitmap editor and converter utilities for the X Window System
- atoms
- make lists of atomic coordinates from crystallographic data
- atoms
- Atoms - Make lists of atomic coordinates from crystallographic data
- atool
- A script for managing file archives of various types
- atop
- Advanced System & Process Monitor
- atopcat
- concatenate raw log files to stdout
- atopconvert
- convert raw log file to newer version
- atopsar
- Advanced System Activity Report (atop related)
- atq
- at, batch, atq, atrm - queue, examine, or delete jobs for later execution
- atril-previewer
- show print preview for a document
- atril-thumbnailer
- create png thumbnails from atril supported documents
- atril
- Atril - The MATE Document Viewer
- atrm
- at, batch, atq, atrm - queue, examine, or delete jobs for later execution
- atropos
- NGS read trimming tool that is specific, sensitive, and speedy
- atsc_epg
- an electronic program guide using ATSC devices
- atst-int32
- atst - test the consistency of target architectures
- atst-int64
- atst - test the consistency of target architectures
- atst-long
- atst - test the consistency of target architectures
- atst
- test the consistency of target architectures
- attachMesh
- part of OpenFOAM (The Open Source CFD Toolbox)
- attachtty
- detachtty, attachtty - run an interactive program with io to a unix-domain socket
- attr
- extended attributes on filesystem objects