Section 1 of the manual describes user commands and tools, for example, file manipulation tools, shells, compilers, web browsers, file and image viewers and editors, and so on.

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Fvwm3Form
FvwmForm - input form module for Fvwm
Fvwm3IconMan
FvwmIconMan - an fvwm icon manager
Fvwm3Ident
FvwmIdent - the Fvwm identify-window module
Fvwm3MFL
FvwmMFL - the Fvwm3 front-loader module
Fvwm3Pager
FvwmPager - the Fvwm Pager module
Fvwm3Perl
FvwmPerl - the fvwm perl manipulator and preprocessor
Fvwm3Rearrange
FvwmRearrange - rearrange fvwm windows
Fvwm3Script
FvwmScript - module to build graphic user interface
FvwmAudio1
FvwmAudio - the FVWM Audio module
FvwmAuto1
FvwmAuto - the FVWM auto-raise module
FvwmBacker1
FvwmBacker - the FVWM background changer module
FvwmBanner1
FvwmBanner - the FVWM Banner
FvwmClean1
FvwmClean - the FVWM desktop clutter reduction module
FvwmDebug1
FvwmDebug - the FVWM module debugger
FvwmIconBox1
FvwmIconBox - the FVWM iconbox module
FvwmIdent1
FvwmIdent - the FVWM identify-window module
FvwmPager1
FvwmPager - the FVWM Pager module
FvwmSave1
FvwmSave - the FVWM desktop-layout saving module
FvwmSaveDesk1
FvwmSaveDesk - another FVWM desktop-layout saving module
FvwmScroll1
FvwmScroll - the FVWM scroll-bar module
FvwmWinList1
FvwmWinList - the FVWM window list module
GDSIIConvert
Convert GDSII geometries and report geometry statistics
GENtle
program to plan genetic cloning experiments
GET
lwp-request - Simple command line user agent
GMT
gmt - The Generic Mapping Tools data processing and display software package
GNPSExport
topp - library for LC/MS data management and analysis - tools  
GNUMail
a fully featured mail application
GPSsmooth
send NMEA-formatted GPS data to a FlightGear instance
GSMarkupBrowser
GSMarkupBrowser.app - GNUstep Development Framework
GSMarkupLocalizableStrings
GSMarkupLocalizableStrings.app - GNUstep Development Framework
GSSpeechRecognitionServer
GNUstep Speech Recognition Server
GSSpeechServer
GNUstep Speech Server
GSTest
gnustep-examples - various example GNUstep tools/applications  
GTAMSAnalyzer
Qualitative Research Software
GWAMA
Genome-Wide Association Meta Analysis
GWCommand
AfterStep module for executing commands
GWorkspace
GNUstep Workspace Manager
Gaussian1dModels
Example of Gaussian Short Rate Model for Interest Rate Derivatives
GenPat
A program to create patch files in VPatch format
GenericWrapper
topp - library for LC/MS data management and analysis - tools  
GeoConvert
- convert geographic coordinates
GeodSolve
- perform geodesic calculations
GeodesicProj
- perform projections based on geodesics
GeoidEval
- look up geoid heights
GlobalOptimizer
Example of Global Optimization Using Different Methods
GoldenCheetah
Cycling Performance Software
GoodStuff1
GoodStuff - the FVWM button panel module
Gorm
Graphical Objects Relationship Modeler
GrandOrgue
Virtual Pipe Organ Software
GraphicsMagick++-config
get information about the installed version of Magick++
GraphicsMagick-config
get information about the installed version of GraphicsMagick
GraphicsMagickWand-config
get information about the installed version of GraphicsMagick
Gravity
- compute the earth's gravity field
Gravity
Gravity  - Afterstep Gravity  
GridmapNavSimul
GUI robot simulation within a gridmap
Grr
an RSS reader for GNUstep
HDFCompass
hdfcompass - HDF Compass Documentation   This document provide information about the HDF Compass application
HEAD
lwp-request - Simple command line user agent
HPC.daligner
daligner - local alignment discovery between long nucleotide sequencing reads
HPC.damapper
HPC.damapper: - long read to reference genome mapping tool
HPXcvt
Reorganise HEALPix data into a 2-D FITS image
HSAILasm
HSAIL - HSAILasm
HTMLLinker
tool to fix up href references in HTML files  
HYPHYMPI
hyphy - Hypothesis testing using Phylogenies (pthreads version)
HandBrakeCLI
versatile DVD ripper and video transcoder (command line)
HelpViewer
Online help viewer for GNUstep programs
HerculesStudio
Hercules GUI Interface
HighResPrecursorMassCorrector
topp - library for LC/MS data management and analysis - tools  
HijriApplet
Hijri Islamic Calendar tray applet
Honey
genomic structural variation discovery
Honey.py
Honey - genomic structural variation discovery
HsColour
generate colourised output for Haskell code
IDConflictResolver
topp - library for LC/MS data management and analysis - tools  
IDDecoyProbability
topp - library for LC/MS data management and analysis - tools  
IDExtractor
topp - library for LC/MS data management and analysis - tools  
IDFileConverter
topp - library for LC/MS data management and analysis - tools  
IDFilter
topp - library for LC/MS data management and analysis - tools  
IDMapper
topp - library for LC/MS data management and analysis - tools  
IDMassAccuracy
topp - library for LC/MS data management and analysis - tools  
IDMerger
topp - library for LC/MS data management and analysis - tools  
IDPosteriorErrorProbability
topp - library for LC/MS data management and analysis - tools  
IDRTCalibration
topp - library for LC/MS data management and analysis - tools  
IDRipper
topp - library for LC/MS data management and analysis - tools  
IDScoreSwitcher
topp - library for LC/MS data management and analysis - tools  
IDSplitter
topp - library for LC/MS data management and analysis - tools  
INIFILE
inifile - OpenLink Virtuoso Opensource ini File Editor
INIFileEditor
topp - library for LC/MS data management and analysis - tools  
INIUpdater
topp - library for LC/MS data management and analysis - tools  
ISQL-VT
isql-vt - OpenLink Virtuoso Opensource SQL Interface
Ident
the AfterStep window identification module  
ImageCreator
topp - library for LC/MS data management and analysis - tools  
ImageMagick-im6.q16
ImageMagick - is a free software suite for the creation, modification and display of bitmap images
ImageMagick-im6.q16hdri
ImageMagick - is a free software suite for the creation, modification and display of bitmap images
ImageMagick
is a free software suite for the creation, modification and display of bitmap images
ImageToDicom
Read a consumer image format input file (anything JIIO can recognize), and create a single or multi frame DICOM Secondary Capture image
InclusionExclusionListCreator
topp - library for LC/MS data management and analysis - tools  
Ink
gnustep-examples - various example GNUstep tools/applications  
InspectAdapter
topp - library for LC/MS data management and analysis - tools  
InternalCalibration
topp - library for LC/MS data management and analysis - tools  
IsobaricAnalyzer
topp - library for LC/MS data management and analysis - tools