Section 1 of the manual describes user commands and tools, for example, file manipulation tools, shells, compilers, web browsers, file and image viewers and editors, and so on.
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- JFractionLab
- jfractionlab - Educative program to practice fractions
- JSBSim
- standalone version of the JSBSim open source flight dynamics model
- Jamulus
- real-time collaborative music session
- Jelly
- genome assembly upgrading tool
- Jelly.py
- Jelly - genome assembly upgrading tool
- JxrDecApp
- JPEG XR Decoder Utility
- JxrEncApp
- JPEG XR Encoder Utility
- KERNEL_PMDAS
- pmdaaix , pmdadarwin , pmdafreebsd , pmdalinux , pmdanetbsd , pmdasolaris , pmdawindows - operating system kernel performance metrics domain agents
- KWStyle
- Style checker for source code
- Kinfold
- Simulate kinetic folding of RNA secondary structures
- Konclude
- Reasoner for the SROIQV(D) Description Logic
- LA2ONE
- daligner - local alignment discovery between long nucleotide sequencing reads
- LAcat
- daligner - local alignment discovery between long nucleotide sequencing reads
- LAcheck
- daligner - local alignment discovery between long nucleotide sequencing reads
- LAmerge
- daligner - local alignment discovery between long nucleotide sequencing reads
- LAshow
- daligner - local alignment discovery between long nucleotide sequencing reads
- LAsort
- daligner - local alignment discovery between long nucleotide sequencing reads
- LAsplit
- daligner - local alignment discovery between long nucleotide sequencing reads
- LabeledEval
- topp - library for LC/MS data management and analysis - tools
- LatentModel
- Example of Modeling Correlated Defaults
- LeakCheck
- LeakTracer - a memory-usage debugger for C++ programs
- LeakTracer
- a memory-usage debugger for C++ programs
- LibSerial
- LibSerial Documentation Contents:
- LimeSuiteGUI
- control and update LMS7 based transceiver devices
- LimeUtil
- control and update LMS7 based transceiver devices
- LinkHut
- check synchronisation via Ableton Link
- LogolExec
- Program to parse a logol grammar and search pattern in a sequence
- LogolMultiExec
- cpu servers
- Look
- Look - AfterStep look
- LuciphorAdapter
- topp - library for LC/MS data management and analysis - tools
- LuserNET
- News Reader for GNUstep
- Lynkeos
- an application for processing of astronomical images
- M1
- The universal Macro assembler
- M2-binary
- M2 - start Macaulay2 , a software system for algebraic geometry research.
- M2
- start Macaulay2 , a software system for algebraic geometry research.
- M2VRequantiser
- MPEG-2 streams requantization
- MDFinder
- GNUstep Finder application
- MIDGsmooth
- send MIDG-formatted GPS data to a FlightGear instance
- MMB
- model the structure and dynamics of macromolecules
- MPDCon
- Music Player Daemon controller
- MPI.mpich2
- MPI - Introduction to the Message-Passing Interface
- MPPICDyMFoam
- part of OpenFOAM (The Open Source CFD Toolbox)
- MPPICFoam
- part of OpenFOAM (The Open Source CFD Toolbox)
- MPPICInterFoam
- part of OpenFOAM (The Open Source CFD Toolbox)
- MQTTAsync_publish
- asynchronously publish the message "Hello World!" to the topic MQTT Examples.
- MQTTAsync_publish_time
- asynchronously publish the current time to the topic data/time.
- MQTTAsync_subscribe
- asynchronously subscribe to the topic MQTT Examples
- MQTTClient_publish
- publish the message "Hello World!" to the topic MQTT Examples
- MQTTClient_publish_async
- MQTTClient_publish - asynchronously publish the message "Hello World!" to the topic MQTT Examples
- MQTTClient_subscribe
- subscribe to the topic MQTT Examples
- MQTTVersion
- print the version strings of an MQTT client library
- MRIConvert
- interactive MRI conversion software
- MRMMapper
- topp - library for LC/MS data management and analysis - tools
- MRMPairFinder
- topp - library for LC/MS data management and analysis - tools
- MRMTransitionGroupPicker
- topp - library for LC/MS data management and analysis - tools
- MSFraggerAdapter
- topp - library for LC/MS data management and analysis - tools
- MSGFPlusAdapter
- topp - library for LC/MS data management and analysis - tools
- MSPCollect
- convert a BLAST output into an MSP file
- MSSimulator
- topp - library for LC/MS data management and analysis - tools
- MSstatsConverter
- topp - library for LC/MS data management and analysis - tools
- MX-calibrate
- MX-Calibrate - calibrate the distance of a detector from a set of powder diffraction patterns
- MaRaClusterAdapter
- topp - library for LC/MS data management and analysis - tools
- Magick++-config
- GraphicsMagick++-config - get information about the installed version of Magick++
- Magick-config
- GraphicsMagick-config - get information about the installed version of GraphicsMagick
- MagickCore-config
- get information about the installed version of ImageMagick
- MagickWand-config
- get information about the installed version of the Magick Wand
- MagneticField
- - compute the earth's magnetic field
- Mailsound
- Play sounds when mail arrives
- MakeDb.py
- Repertoire clonal assignment toolkit (Python 3)
- MapAlignerIdentification
- topp - library for LC/MS data management and analysis - tools
- MapAlignerPoseClustering
- topp - library for LC/MS data management and analysis - tools
- MapAlignerSpectrum
- topp - library for LC/MS data management and analysis - tools
- MapAlignerTreeGuided
- topp - library for LC/MS data management and analysis - tools
- MapNormalizer
- topp - library for LC/MS data management and analysis - tools
- MapRTTransformer
- topp - library for LC/MS data management and analysis - tools
- MapStatistics
- topp - library for LC/MS data management and analysis - tools
- Mapper
- orienteering map drawing software
- MarketModels
- MarketModel - Example of Interst Rate Derivative Pricing
- MascotAdapter
- topp - library for LC/MS data management and analysis - tools
- MascotAdapterOnline
- topp - library for LC/MS data management and analysis - tools
- MaskPrimers.py
- Removes primers and annotates sequences with primer and barcode identifiers
- MassCalculator
- topp - library for LC/MS data management and analysis - tools
- MassTraceExtractor
- topp - library for LC/MS data management and analysis - tools
- MemParse
- xerces-c - xerces-c sample program
- MetaProSIP
- topp - library for LC/MS data management and analysis - tools
- MetaboliteAdductDecharger
- topp - library for LC/MS data management and analysis - tools
- MetaboliteSpectralMatcher
- topp - library for LC/MS data management and analysis - tools
- MinOZW
- a small test application for libopenzwave
- MindTheGap
- Perform detection and assembly of DNA insertion variants
- MkOneOf
- a helper program to use with DtdToHaskell
- MonitorWharf
- Wharf - AfterStep module for launching or docking applications aka button bar
- MulticurveBootstrapping
- Example of using QuantLib
- MultidimIntegral
- Example of Multi-dimensional Numerical Integration
- MultiplexResolver
- topp - library for LC/MS data management and analysis - tools
- MyBackground
- MyBackground - details how background is to be rendered
- MyFrame
- MyFrame - defines how AfterStep should construct window's frame
- MyStyle
- MyStyle - defines combination of color, font, style, background to be used together
- MyriMatchAdapter
- topp - library for LC/MS data management and analysis - tools
- MzMLSplitter
- topp - library for LC/MS data management and analysis - tools
- MzTabExporter
- topp - library for LC/MS data management and analysis - tools