Section 1 of the manual describes user commands and tools, for example, file manipulation tools, shells, compilers, web browsers, file and image viewers and editors, and so on.

Page 30

bdy
 boundary curve finder
beads
2D gel electrophoresis spot detection  
beagle
Beagle - Genotype calling, genotype phasing and imputation of ungenotyped markers
bean-bake
bake a static web view of a Beancount ledger
bean-check
parse and check a Beancount ledger
bean-doctor
Beancount debugging tool
bean-example
generate a randomized Beancount example file
bean-extract
extract Beancount transactions from bank statements and similar documents
bean-file
file and rename Beancount input documents after transaction extraction
bean-format
pretty print and align a Beancount ledger
bean-identify
identify Beancount ledger for transaction extraction
bean-price
fetch from the internet commodity prices for Beancount processing
bean-query
interactive shell for the Beancount Query Language
bean-report
produces various accounting reports from a Beancount ledger
bean-sql
convert a Beancount ledger to an SQL database
bean-web
simple Web interface to a Beancount ledger
beanstalkd
simple, fast work queue
bear-citnames
deduce command semantic
bear-intercept
intercept command executions in user space
bear
Bear - a tool to generate compilation database for Clang tooling
beast-mcmc
Bayesian evolutionary analysis sampling trees
beast2-mcmc
Bayesian MCMC phylogenetic inference
beauti
Bayesian Evolutionary Analysis Utility
beauti2
matches beast2-mcmc
beav
binary file editor and viewer
bed2bed_display
Convert BED file to BED format suitable for displaying ChIP-seq peaks
bed2gff3
ucsc_genes2gff.pl - Convert UCSC Genome Browser-format gene files into GFF files suitable for loading into gbrowse
bed2sga
Convert BED format into SGA format
bedextract
manual page for bedextract 2.4.41+dfsg
bedmap
manual page for bedmap 2.4.41+dfsg
bedops-starch
manual page for bedops-starch 2.4.41+dfsg
bedops
manual page for bedops 2.4.41+dfsg
beef
Flexible Brainfuck interpreter
beep
beep the pc speaker any number of ways
beet
music tagger and library organizer
bel-resources
Command Line Interface for BEL Resources
belenios-tool
election management tool
belvu
View multiple alignments in good-looking colours
bemenu
dynamic menu inspired by dmenu (1)
ben
transition tracker manager
benchcmp
displays performance changes between benchmarks
benchmark_xl
benchmark_xl
benchmarking-image-features
GUI app for different detector/descriptors
bepasty-object
Manage objects stored by bepasty
bepasty-server
Run a bepasty server through the builtin WSGI server
berdecode
decode BER encoded data
berkeley-abc
A System for Sequential Synthesis and Verification
berkeley-express
Streaming quantification for high-throughput sequencing
berkeley_db5.3_svc
Berkeley DB RPC server
berkeley_db_svc
berkeley_db5.3_svc - Berkeley DB RPC server
besside-ng-crawler
filter EAPOL frames from a directory of capture files
beta2uni
Convert a polytonic Greek document from Beta Code to UTF-8
betaradio
An easy way to listen to internet radio of Taiwan
between-two-genes
select a range of tab-delimited lines
bez2mesh
dices a BEZ file to a list of MESHes
bf-animation-editor
The animation editor for the Bear Engine
bf-level-editor
The level editor for the Bear Engine
bf-model-editor
The model editor for the Bear Engine
bf_compact-bdb
bf_compact - shell script to compact a bogofilter directory
bf_compact-sqlite
bf_compact - shell script to compact a bogofilter directory
bf_compact-tokyocabinet
bf_compact - shell script to compact a bogofilter directory
bf_compact
shell script to compact a bogofilter directory
bf_copy-bdb
bf_copy - shell script to copy a bogofilter working directory
bf_copy-sqlite
bf_copy - shell script to copy a bogofilter working directory
bf_copy-tokyocabinet
bf_copy - shell script to copy a bogofilter working directory
bf_copy
shell script to copy a bogofilter working directory
bf_tar-bdb
bf_tar - shell script to write a tar file of a bogofilter directory to stdout
bf_tar-sqlite
bf_tar - shell script to write a tar file of a bogofilter directory to stdout
bf_tar-tokyocabinet
bf_tar - shell script to write a tar file of a bogofilter directory to stdout
bf_tar
shell script to write a tar file of a bogofilter directory to stdout
bfbtester
Brute Force Binary Tester
bfs
breadth-first search for your files
bg-installer
Standardized installer program
bg
This manual page is part of the POSIX Programmer's Manual. The Linux implementation of this interface may differ (consult the corresponding Linux manual page for details of Linux behavior), or the interface may not be implemented on Linux
bg5+latex
bg5+pdflatex
bg5conv
convert a TeX document in Big 5 encoding into `preprocessed' form
bg5latex
bg5pdflatex
bg_gen_unified_kernel
Generate unified kernel image
bg_printenv
EFI - bg_printenv
bg_setenv
EFI - bg_setenv
bget
axgetput - upload or download files via AX.25 / axspawn Linux login session
bgoffice-dict-download
download dictionaries for bgoffice
bgpdump
translate MRT format files into readable output
bgzip
Block compression/decompression utility
biabam
biabam is a bash attachment mailer
bib2bib
BibX2bib - Filter BibTeX data bases  
bib2gls
bib2gls [ option ]+ auxfile
bib2pdf
script to convert BibTeX format files to PDF format files  
bib2xml
bibutils - bibliography conversion utilities
bibclean
prettyprint and syntax check BibTeX and Scribe bibliography data base files
bibcop
Style Checker and Fixer of BibTeX Files (.bib)
bibcursed
manipulate BibTeX files  
bibdoiadd
bibdoiadd.pl - add DOI numbers to papers in a given bib file
biber
"biber" - A bibtex replacement for users of biblatex
bibhva
A BibTeX wrapper for use with HeVeA
biblatex2xml
bibutils - bibliography conversion utilities
bible
Lookup words and verses in the Bible (King James version)
bibledit-cloud
Bibledit Cloud server