Section 1 of the manual describes user commands and tools, for example, file manipulation tools, shells, compilers, web browsers, file and image viewers and editors, and so on.
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- bdy
- boundary curve finder
- beads
- 2D gel electrophoresis spot detection
- beagle
- Beagle - Genotype calling, genotype phasing and imputation of ungenotyped markers
- bean-bake
- bake a static web view of a Beancount ledger
- bean-check
- parse and check a Beancount ledger
- bean-doctor
- Beancount debugging tool
- bean-example
- generate a randomized Beancount example file
- bean-extract
- extract Beancount transactions from bank statements and similar documents
- bean-file
- file and rename Beancount input documents after transaction extraction
- bean-format
- pretty print and align a Beancount ledger
- bean-identify
- identify Beancount ledger for transaction extraction
- bean-price
- fetch from the internet commodity prices for Beancount processing
- bean-query
- interactive shell for the Beancount Query Language
- bean-report
- produces various accounting reports from a Beancount ledger
- bean-sql
- convert a Beancount ledger to an SQL database
- bean-web
- simple Web interface to a Beancount ledger
- beanstalkd
- simple, fast work queue
- bear-citnames
- deduce command semantic
- bear-intercept
- intercept command executions in user space
- bear
- Bear - a tool to generate compilation database for Clang tooling
- beast-mcmc
- Bayesian evolutionary analysis sampling trees
- beast2-mcmc
- Bayesian MCMC phylogenetic inference
- beauti
- Bayesian Evolutionary Analysis Utility
- beauti2
- matches beast2-mcmc
- beav
- binary file editor and viewer
- bed2bed_display
- Convert BED file to BED format suitable for displaying ChIP-seq peaks
- bed2gff3
- ucsc_genes2gff.pl - Convert UCSC Genome Browser-format gene files into GFF files suitable for loading into gbrowse
- bed2sga
- Convert BED format into SGA format
- bedextract
- manual page for bedextract 2.4.41+dfsg
- bedmap
- manual page for bedmap 2.4.41+dfsg
- bedops-starch
- manual page for bedops-starch 2.4.41+dfsg
- bedops
- manual page for bedops 2.4.41+dfsg
- beef
- Flexible Brainfuck interpreter
- beep
- beep the pc speaker any number of ways
- beet
- music tagger and library organizer
- bel-resources
- Command Line Interface for BEL Resources
- belenios-tool
- election management tool
- belvu
- View multiple alignments in good-looking colours
- bemenu
- dynamic menu inspired by dmenu (1)
- ben
- transition tracker manager
- benchcmp
- displays performance changes between benchmarks
- benchmark_xl
- benchmark_xl
- benchmarking-image-features
- GUI app for different detector/descriptors
- bepasty-object
- Manage objects stored by bepasty
- bepasty-server
- Run a bepasty server through the builtin WSGI server
- berdecode
- decode BER encoded data
- berkeley-abc
- A System for Sequential Synthesis and Verification
- berkeley-express
- Streaming quantification for high-throughput sequencing
- berkeley_db5.3_svc
- Berkeley DB RPC server
- berkeley_db_svc
- berkeley_db5.3_svc - Berkeley DB RPC server
- besside-ng-crawler
- filter EAPOL frames from a directory of capture files
- beta2uni
- Convert a polytonic Greek document from Beta Code to UTF-8
- betaradio
- An easy way to listen to internet radio of Taiwan
- between-two-genes
- select a range of tab-delimited lines
- bez2mesh
- dices a BEZ file to a list of MESHes
- bf-animation-editor
- The animation editor for the Bear Engine
- bf-level-editor
- The level editor for the Bear Engine
- bf-model-editor
- The model editor for the Bear Engine
- bf_compact-bdb
- bf_compact - shell script to compact a bogofilter directory
- bf_compact-sqlite
- bf_compact - shell script to compact a bogofilter directory
- bf_compact-tokyocabinet
- bf_compact - shell script to compact a bogofilter directory
- bf_compact
- shell script to compact a bogofilter directory
- bf_copy-bdb
- bf_copy - shell script to copy a bogofilter working directory
- bf_copy-sqlite
- bf_copy - shell script to copy a bogofilter working directory
- bf_copy-tokyocabinet
- bf_copy - shell script to copy a bogofilter working directory
- bf_copy
- shell script to copy a bogofilter working directory
- bf_tar-bdb
- bf_tar - shell script to write a tar file of a bogofilter directory to stdout
- bf_tar-sqlite
- bf_tar - shell script to write a tar file of a bogofilter directory to stdout
- bf_tar-tokyocabinet
- bf_tar - shell script to write a tar file of a bogofilter directory to stdout
- bf_tar
- shell script to write a tar file of a bogofilter directory to stdout
- bfbtester
- Brute Force Binary Tester
- bfs
- breadth-first search for your files
- bg-installer
- Standardized installer program
- bg
- This manual page is part of the POSIX Programmer's Manual. The Linux implementation of this interface may differ (consult the corresponding Linux manual page for details of Linux behavior), or the interface may not be implemented on Linux
- bg5+latex
- bg5+pdflatex
- bg5conv
- convert a TeX document in Big 5 encoding into `preprocessed' form
- bg5latex
- bg5pdflatex
- bg_gen_unified_kernel
- Generate unified kernel image
- bg_printenv
- EFI - bg_printenv
- bg_setenv
- EFI - bg_setenv
- bget
- axgetput - upload or download files via AX.25 / axspawn Linux login session
- bgoffice-dict-download
- download dictionaries for bgoffice
- bgpdump
- translate MRT format files into readable output
- bgzip
- Block compression/decompression utility
- biabam
- biabam is a bash attachment mailer
- bib2bib
- BibX2bib - Filter BibTeX data bases
- bib2gls
- bib2gls [ option ]+ auxfile
- bib2pdf
- script to convert BibTeX format files to PDF format files
- bib2xml
- bibutils - bibliography conversion utilities
- bibclean
- prettyprint and syntax check BibTeX and Scribe bibliography data base files
- bibcop
- Style Checker and Fixer of BibTeX Files (.bib)
- bibcursed
- manipulate BibTeX files
- bibdoiadd
- bibdoiadd.pl - add DOI numbers to papers in a given bib file
- biber
- "biber" - A bibtex replacement for users of biblatex
- bibhva
- A BibTeX wrapper for use with HeVeA
- biblatex2xml
- bibutils - bibliography conversion utilities
- bible
- Lookup words and verses in the Bible (King James version)
- bibledit-cloud
- Bibledit Cloud server