Section 1 of the manual describes user commands and tools, for example, file manipulation tools, shells, compilers, web browsers, file and image viewers and editors, and so on.

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blasr
Map SMRT Sequences to a reference genome
blast_top_hits
reduces a blast or blat output file to the top hit for each query sequence only
blastn_to_phandango
create a plot file for visualisation in phandango
blat2gff
Converts BLAT output files to GFF formatted files
blaze-add
adds a blog post or a page to the BlazeBlogger repository
blaze-config
displays or sets BlazeBlogger configuration options
blaze-edit
edits a blog post or a page in the BlazeBlogger repository
blaze-init
creates or recovers a BlazeBlogger repository
blaze-list
lists blog posts or pages in the BlazeBlogger repository
blaze-log
displays the BlazeBlogger repository log
blaze-make
generates a blog from the BlazeBlogger repository
blaze-remove
removes a post or page from the BlazeBlogger repository
blaze
allows you to run BlazeBlogger utilities with a single command
bleachbit
Delete unnecessary files from the system
bleak
argparse-manpage
blend
MRtrix3 - diffusion-weighted MRI white matter tractography
blender
a full-featured 3D application
bless
graphical hexadecimal Gtk# editor
blhc
build log hardening check, checks build logs for missing hardening flags
bliss
compute automorphism groups and canonical labelings of graphs
blitz
Securely transfer files between two workstations through NAT/Firewall
blixem
display multiple alignments against a reference sequence
blixemh
display multiple alignments against a reference sequence
blkcalc
Converts between unallocated disk unit numbers and regular disk unit numbers
blkcat
Display the contents of file system data unit in a disk image
blkls
List or output file system data units
blkparse
produce formatted output of event streams of block devices  
blkrawverify
verifies an output file produced by blkparse  
blkreplay
block device testing and benchmarking tool
blkstat
Display details of a file system data unit (i.e. block or sector)
blockMesh
part of OpenFOAM (The Open Source CFD Toolbox)
blockdiag3
generate block-diagram image file from spec-text file
blockmean
filter to block average (x,y,z) data by L2 norm
blockmedian
filter to block average (x,y,z) data by L1 norm
blockmode
filter to block average (x,y,z) data by mode estimation
blogin
clogin - Cisco login script
blood-elf
Get mescc with dwarfs  
bloom
utility to work with Bloom filters
bloomfilter.sh
Filters reads potentially sharing a kmer with a reference
bls-standalone
build log scanner, standalone version
blst2tkns
tokenize XML-formatted magicblast output
bluealsa-aplay
a simple bluealsa player
bluefeather
Bluefeather
bluefish
editor for experienced web designers and programmers  
blueman-adapters
an utility to set adapter properties  
blueman-applet
a tray applet for managing bluetooth  
blueman-manager
bluetooth device manager  
blueman-sendto
application for sending files to bluetooth devices  
blueman-services
Configure local bluetooth services  
blueman-tray
a status icon application for blueman
bluemon-client
Activate or deactivate programs based on bluetooth link quality
bluemon-query
Query the state of and send commands to bluemon(1)
bluemon
Activate or deactivate programs based on bluetooth link quality
bluemoon
Bluemoon configuration utility
bluetooth-sendto
GTK application for transferring files over Bluetooth
bluetooth
enable/disable internal bluetooth device
bluetoothService
command line binary for bluetoothService
bluetoothctl
bluetoothctl: - interactive bluetooth control tool
blur_image
Off-screen image blurring utility using OpenGL ES 3.0.  
bmake
maintain program dependencies
bmaptool
create block map (bmap) for a file or copy a file using bmap  
bmd-setup
Configuration utility for Blackmagic Design converters
bmf
efficient Bayesian mail filter
bmfconv
Database converter for bmf
bmore
browse through a binary file
bmp
bmp: - babel universal macro processor
bmptopnm
convert a BMP file into a PBM, PGM, or PNM image  
bmptoppm
replaced by bmptopnm  
bmtoa
bitmap, bmtoa, atobm - bitmap editor and converter utilities for the X Window System
bn_camera
program to publish images from camera to MQTT
bn_darknet
program to analyse images from MQTT by darknet
bn_dashboard
program to display results from MQTT
bn_data_collector
program to collect data from MQTT
bn_gmail
program to send deep learning results from MQTT to gmail
bn_telegram
program to send deep learning results from MQTT to telegram
bnbot
Battle.net text-based chat bot client
bncdb
pvpgn Constant DataBase (CDB) tool
bnchat
Battle.net text-based chat client
bnd
Create and diagnose OSGi bundles
bnep-tester
Kernel BNEP test tool
bnetd
Unix Battle.net daemon
bnftp
Battle.net file transfer client
bni2tga
convert a Battle.net icon file to a Targa file
bnibuild
build a Battle.net icon file from a directory of Targa icon files
bniextract
extract a directory of Targa icon files from a Battle.net icon file
bnilist
list contents of a Battle.net icon file
bno_plot
generate interactive 3D plot of IO blocks and sizes  
bnpass
bnetd password utility
bnstat
Battle.net statisics client
bntrackd
bnproxy - bnetd tracking daemon
boats
a race scenario drawing tool
bochs-bin
bochs - Portable x86 Emulator
bochs
Portable x86 Emulator
bogofilter-bdb
bogofilter - fast Bayesian spam filter
bogofilter-sqlite
bogofilter - fast Bayesian spam filter
bogofilter-tokyocabinet
bogofilter - fast Bayesian spam filter
bogofilter
fast Bayesian spam filter
bogolexer-bdb
bogolexer - Utility program for separating email messages into tokens
bogolexer-sqlite
bogolexer - Utility program for separating email messages into tokens
bogolexer-tokyocabinet
bogolexer - Utility program for separating email messages into tokens